ShinyGO 0.81 - South Dakota State University
Just paste your gene list to get enriched GO terms and othe pathways for over 14,000 species. based on annotation from Ensembl and STRING-db. Produce KEGG pathway diagrams with your genes highlighted, hierarchical clustering trees and networks summarizing overlapping terms/pathways, protein-protein interaction networks, gene characterristics ...
Exploratory Gene Ontology Analysis with Interactive Visualization …
2019年5月24日 · We rely on novel graphical display and software architecture that allow significant interaction. To illustrate the potential of our strategies, we provide examples from high-throughput genomic...
Tools to browse, search, visualize and curate GO - Gene Ontology …
Drill-down browsing of the GO ontology is possible via an interactive tree. To browse curated and inferred GO annotations, visit AmiGO. AmiGO can be used to search both the GO ontology, the GO annotations and details about gene products described in the GO knowledgebase.
GOnet: a tool for interactive Gene Ontology analysis
2018年12月7日 · Addressing both visualization of term hierarchy and gene-term relations was the main motivation for creating the open source web-application, GOnet (https://github.com/mikpom/gonet). It is achieved by generating a fully interactive graph with gene and term nodes.
NaviGO: interactive tool for visualization and functional similarity ...
2017年3月20日 · NaviGO is a web-based tool for interactive visualization, retrieval, and computation of functional similarity and associations of GO terms and genes. Similarity of GO terms and gene functions is quantified with six different scores including protein-protein interaction and context based association scores we have developed in our previous works.
WEGO 2.0: a web tool for analyzing and plotting GO …
2018年5月18日 · WEGO (Web Gene Ontology Annotation Plot), created in 2006, is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results.
Gene Ontology Graph Visualization - Blast2GO
Visualization is a helpful component in the process of interpreting results from high-throughput experiments, and can be indispensable when working with large data-sets. Within the GO, the "natural" visualization format is the Direct Acyclic Graph of a group of annotated sequences. In the DAG, each node represents a GO term.
adidevara/GOFIG: Tool for Gene Ontology Analysis and Visualization …
GOFIG is a tool for gene ontology enrichment analysis and visualization. This tool is very helpful in generating publication quality figures for the manuscripts. A list of differentially expressed genes and log fold-changes are used as input.
Exploratory Gene Ontology Analysis with Interactive Visualization
2019年5月24日 · Interactive features and Gene Ontology navigation. By choosing which nodes to display in the focus graphs, against which context to interpret them, the user can navigate the GO and extract annotation information useful for simulations and study designs.
GOLEM: an interactive graph-based gene-ontology navigation …
2006年10月10日 · GOLEM is a useful software tool for biologists interested in visualizing the local directed acyclic graph structure of the gene ontology hierarchy and searching for gene ontology terms enriched in genes of interest.